resurfemg package

Subpackages

• resurfemg.cli package
  • Submodules
    • resurfemg.cli.cli module
      • main()
      • make_parser()
      • set_common_args()
  • Module contents
• resurfemg.data_connector package
  • Submodules
    • resurfemg.data_connector.adicht_reader module
      • AdichtReader
    • resurfemg.data_connector.config module
      • Config
      • convert_to_os_path()
      • find_repo_root()
      • hash_it_up_right_all()
    • resurfemg.data_connector.converter_functions module
      • csv_from_jkmn_to_array()
      • dvrmn_csv_freq_find()
      • dvrmn_csv_to_array()
      • load_adicht()
      • load_csv()
      • load_file()
      • load_mat()
      • load_npy()
      • load_poly5()
      • matlab5_jkmn_to_array()
      • poly5unpad()
      • poly_dvrman()
    • resurfemg.data_connector.data_classes module
      • EmgDataGroup
      • TimeSeries
      • TimeSeriesGroup
      • VentilatorDataGroup
    • resurfemg.data_connector.file_discovery module
      • find_files()
      • find_folders()
    • resurfemg.data_connector.peakset_class module
      • PeaksSet
    • resurfemg.data_connector.synthetic_data module
      • respiratory_pattern_generator()
      • simulate_emg()
      • simulate_muscle_dynamics()
      • simulate_ventilator_data()
    • resurfemg.data_connector.tmsisdk_lite module
      • Channel
      • Poly5Reader
  • Module contents
• resurfemg.helper_functions package
  • Submodules
    • resurfemg.helper_functions.data_classes_quality_assessment module
      • initialize_emg_tests()
      • initialize_linked_peaks_tests()
      • initialize_pocc_tests()
      • test_aub()
      • test_consecutive_poccs()
      • test_curve_fits()
      • test_emg_quality()
      • test_event_timing()
      • test_fraction_detected_breaths()
      • test_interpeak_distance()
      • test_linked_peak_sets()
      • test_pocc_quality()
      • test_pocc_upslope()
      • test_relative_aub()
      • test_relative_etp()
      • test_snr()
    • resurfemg.helper_functions.math_operations module
      • Range
      • bell_curve()
      • delay_embedding()
      • derivative()
      • get_dict_key_where_value()
      • intersections()
      • merge()
      • ranges_of()
      • raw_overlap_percent()
      • running_smoother()
      • save_preprocessed()
      • scale_arrays()
      • slices_jump_slider()
      • slices_slider()
      • zero_one_for_jumps_base()
    • resurfemg.helper_functions.visualization module
      • show_periodogram()
      • show_power_spectrum()
      • show_psd_welch()
  • Module contents
• resurfemg.pipelines package
  • Submodules
    • resurfemg.pipelines.ipy_widgets module
      • file_select()
    • resurfemg.pipelines.processing module
      • ecg_removal_gating()
      • quick_look()
    • resurfemg.pipelines.synthetic_data module
      • simulate_raw_emg()
      • simulate_ventilator_data()
      • synthetic_emg_cli()
      • synthetic_ventilator_data_cli()
  • Module contents
• resurfemg.postprocessing package
  • Submodules
    • resurfemg.postprocessing.baseline module
      • moving_baseline()
      • slopesum_baseline()
    • resurfemg.postprocessing.event_detection module
      • detect_emg_breaths()
      • detect_ventilator_breath()
      • find_linked_peaks()
      • find_occluded_breaths()
      • onoffpeak_baseline_crossing()
      • onoffpeak_slope_extrapolation()
    • resurfemg.postprocessing.features module
      • amplitude()
      • area_under_baseline()
      • pseudo_slope()
      • respiratory_rate()
      • time_product()
      • time_to_peak()
    • resurfemg.postprocessing.quality_assessment module
      • detect_extreme_time_products()
      • detect_local_high_aub()
      • detect_non_consecutive_manoeuvres()
      • evaluate_bell_curve_error()
      • evaluate_event_timing()
      • evaluate_respiratory_rates()
      • interpeak_dist()
      • percentage_under_baseline()
      • pocc_quality()
      • snr_pseudo()
  • Module contents
• resurfemg.preprocessing package
  • Submodules
    • resurfemg.preprocessing.ecg_removal module
      • detect_ecg_peaks()
      • gating()
      • wavelet_denoising()
    • resurfemg.preprocessing.envelope module
      • full_rolling_arv()
      • full_rolling_rms()
      • naive_rolling_rms()
      • rolling_arv_ci()
      • rolling_rms_ci()
    • resurfemg.preprocessing.filtering module
      • compute_power_loss()
      • emg_bandpass_butter()
      • emg_highpass_butter()
      • emg_lowpass_butter()
      • notch_filter()
  • Module contents

Module contents